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PMID	TITRE	REVUE	ANNEE – IF
36087643	Simultaneous co-infection with Omicron (B.1.1.529) and Delta (21A/478K.V1) SARS-CoV-2 variants confirmed by whole genome sequencing.	Case Reports Int J Infect Dis.	2022 Nov;124:104-106
36098494	Dynamics of viral shedding during ancestral or Omicron BA.1 SARS-CoV-2 infection and enhancement of pre-existing immunity during breakthrough infections.	Emerg Microbes Infect.	2022 Dec;Vol.11(1):2423-2432
36274062	Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation in France.	Nat. Commun.	2022 Oct 23;13(1):6316.
36309317	Genomic evolution of SARS-CoV-2 in Reunion Island.	Infect Genet Evol	2022 Oct 26;106.105381.
36311621	Rapid investigation of BA.4/BA.5 cases in France.	Front Public Health.	2022 Oct 10;10.1006631
36016297	Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches	Viruses	2022 Aug; 14(8): 1674.
35636438	Sotrovimab drives SARS-CoV-2 omicron variant evolution in immunocompromised patients - PubMed (nih.gov)	Lancet Microbe	2022 Aug;3(8):e559
35703398	A Short COVID-19 Outbreak in an Isolated Pacific Island: A Retrospective Study - PubMed (nih.gov)	Asia Pac J Public Health	2022 Jul;34(5):586-588.
35283309	Investigation of vaccine breakthrough infections by vaccination scheme during the Delta variant wave in France - PubMed (nih.gov)	Clin Microbiol Infect	2022 Jul;28(7):1032-1034.
35792280	Evidence of co-infections during Delta and Omicron SARS-CoV-2 variants co-circulation through prospective screening and sequencing - PubMed (nih.gov)	Clin Microbiol Infect	2022 Jul 2; S1198-743X (22)00345-7.
35632697	Metagenomic Analysis Reveals High Abundance of Torque Teno Mini Virus in the Respiratory Tract of Children with Acute Respiratory Illness - PubMed (nih.gov)	Viruses	2022 May 3;14(5):955
35632661	)SARS-CoV-2 Omicron Variant, Lineage BA.1, Is Associated with Lower Viral Load in Nasopharyngeal Samples Compared to Delta Variant - PubMed (nih.gov	Viruses	2022 Apr 28;14(5):919
35362406	Impact of the Omicron variant on SARS-CoV-2 reinfections in France, March 2021 to February 2022 - PubMed (nih.gov)	Euro Surveill	2022 Mar;27(13):2200247
35639802	Are Anti-Receptor-Binding Domain Antibodies Still a Relevant Proxy for Monitoring SARS-CoV-2 Neutralizing Activity in the Omicron Era? - PubMed (nih.gov)	Clin Chem	2022 3;68(7):984-986
35002989	Bacterial Signatures of Paediatric Respiratory Disease: An Individual Participant Data Meta-Analysis - PubMed (nih.gov)	Front Microbiol	2021 Dec 23;12:711134..3389/fmicb.2
34763750	Re-emergence of enterovirus D68 in Europe after easing the COVID-19 lockdown, September 2021 - PubMed (nih.gov)	Euro Surveill	2021 Nov;26(45):2100998.
34469708	Co-infection with Legionella and SARS-CoV-2, France, March 2020 - PubMed (nih.gov)	Emerg Infect Dis	2021 Nov;27(11):2864-2868
34341781	Bamlanivimab as monotherapy in two immunocompromised patients with COVID-19 - PubMed (nih.gov	Lancet Microbe	2021 Sep;2(9):e424.
33318859	Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation	Virus Evol	2020 Jul; 6(2): veaa075

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